:orphan:

Atlasapprox-disease Example Gallery: Python
===================================

Below is a gallery of examples for the atlasapprox-disease APIs in Python.


.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="The atlasapprox-disease Python API provides access to over 600 disease-related single-cell datasets. Currently, it includes datasets from the CELLxGENE Census as its initial source, covering diseases such as COVID-19, diabetes, acute kidney failure, and gastritis, along with metadata like cell type, developmental stage, and sex. This API enables users to quickly explore cellular and gene expression patterns in disease contexts.">

.. only:: html

  .. image:: /python/gallery/images/thumb/sphx_glr_beginner_guide_thumb.png
    :alt:

  :ref:`sphx_glr_python_gallery_beginner_guide.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Beginner guide</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This tutorial showcases one of the basic ways to perform differential gene expression analysis using the atlasapprox-disease API. You will use the metadata and differential_gene_expression functions to identify datasets for a specific cell type, analyze gene expression changes in a disease context, and identify frequently occurring differentially expressed genes across datasets. The tutorial uses memory B cells as an example, but you can apply the code to any cell type, disease, or tissue of interest using the API&#x27;s many features.">

.. only:: html

  .. image:: /python/gallery/images/thumb/sphx_glr_explore_differential_gene_exp_thumb.png
    :alt:

  :ref:`sphx_glr_python_gallery_explore_differential_gene_exp.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Differential gene expression analysis</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /python/gallery/beginner_guide
   /python/gallery/explore_differential_gene_exp


.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: gallery_python.zip </python/gallery/gallery_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: gallery_jupyter.zip </python/gallery/gallery_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_